Transcriptomic profiling of viral infections in the brain of a key pollinator: metadata reports and comparisons
Samples Summary
Sample ID |
Sample name |
Viral load |
Behavioural test score |
Colony |
RNA extraction batch |
Clean up batch |
1 |
2_2C49M |
low |
0 |
cruickshank |
5 |
batch1_1 |
2 |
2_3C16M |
low |
0 |
cruickshank |
6 |
batch1_2 |
3 |
2_3N42M |
low |
0 |
newburgh |
4 |
batch1_3 |
4 |
2_3N2M |
low |
0 |
newburgh |
4 |
batch1_4 |
5 |
2_1N36M |
low |
21 |
newburgh |
1 |
batch1_5 |
6 |
2_3N18M |
low |
21 |
newburgh |
5 |
batch1_6 |
7 |
2_2C32M |
low |
21 |
cruickshank |
6 |
batch1_7 |
8 |
2_3C4M |
low |
21 |
cruickshank |
7 |
batch1_8 |
9 |
2_1C11M |
low |
0 |
cruickshank |
5 |
batch2_1 |
10 |
2_2C7M |
high |
0 |
cruickshank |
5 |
batch2_2 |
11 |
2_3N30M |
low |
0 |
newburgh |
4 |
batch2_3 |
12 |
2_1N17M |
high |
0 |
newburgh |
4 |
batch2_4 |
13 |
2_1C8M |
low |
21 |
cruickshank |
3 |
batch2_5 |
14 |
2_1C48M |
high |
21 |
cruickshank |
6 |
batch2_6 |
15 |
2_2N39M |
low |
21 |
newburgh |
4 |
batch2_7 |
16 |
2_3N46M |
high |
21 |
newburgh |
7 |
batch2_8 |
17 |
2_2C3M |
low |
0 |
cruickshank |
3 |
batch3_1 |
18 |
2_1N42M |
low |
0 |
newburgh |
3 |
batch3_2 |
19 |
2_3N19M |
low |
21 |
newburgh |
6 |
batch3_3 |
20 |
2_2C24M |
low |
21 |
cruickshank |
6 |
batch3_4 |
21 |
2_3N12M |
high |
0 |
newburgh |
4 |
batch3_5 |
22 |
2_2C15M |
high |
0 |
cruickshank |
3 |
batch3_6 |
23 |
2_2N27M |
high |
21 |
newburgh |
4 |
batch3_7 |
24 |
2_2C4M |
high |
21 |
cruickshank |
5 |
batch3_8 |
25 |
2_3C15M |
low |
0 |
cruickshank |
6 |
batch4_1 |
26 |
2_1N4M |
low |
0 |
newburgh |
5 |
batch4_2 |
27 |
2_3N6M |
low |
21 |
newburgh |
5 |
batch4_3 |
28 |
2_3C20M |
low |
21 |
cruickshank |
7 |
batch4_4 |
29 |
2_1N31M |
high |
0 |
newburgh |
6 |
batch4_5 |
30 |
2_1C34M |
high |
0 |
cruickshank |
2 |
batch4_6 |
31 |
2_3N1M |
high |
21 |
newburgh |
4 |
batch4_7 |
32 |
2_3C14M |
high |
21 |
cruickshank |
2 |
batch4_8 |
33 |
2_1C40M |
high |
21 |
cruickshank |
5 |
batch4_9 |
34 |
2_1C39M |
high |
21 |
cruickshank |
5 |
batch4_10 |
Colonies vs. Viral Load
Colony |
Viral Load |
Count |
CBG2 |
high |
8 |
CBG2 |
low |
10 |
NBH2 |
high |
6 |
NBH2 |
low |
10 |
Colonies vs. Behavioural Test Score
Colony |
Behavioural Test Score |
Count |
CBG2 |
0 |
8 |
CBG2 |
21 |
10 |
NBH2 |
0 |
8 |
NBH2 |
21 |
8 |
Colonies vs. Viral Load vs. Behavioural Test Score
Colony |
Viral Load |
Behavioural Test Score |
Count |
CBG2 |
high |
0 |
3 |
CBG2 |
high |
21 |
5 |
CBG2 |
low |
0 |
5 |
CBG2 |
low |
21 |
5 |
NBH2 |
high |
0 |
3 |
NBH2 |
high |
21 |
3 |
NBH2 |
low |
0 |
5 |
NBH2 |
low |
21 |
5 |
RNA Extraction Batch vs. Viral Load
RNA Extraction Batch |
Viral Load |
Count |
1 |
low |
1 |
2 |
high |
2 |
3 |
high |
1 |
3 |
low |
3 |
4 |
high |
4 |
4 |
low |
4 |
5 |
high |
4 |
5 |
low |
5 |
6 |
high |
2 |
6 |
low |
5 |
7 |
high |
1 |
7 |
low |
2 |
RNA Extraction Batch vs. Behavioural Test Score
RNA Extraction Batch |
Behavioural Test Score |
Count |
1 |
21 |
1 |
2 |
0 |
1 |
2 |
21 |
1 |
3 |
0 |
3 |
3 |
21 |
1 |
4 |
0 |
5 |
4 |
21 |
3 |
5 |
0 |
4 |
5 |
21 |
5 |
6 |
0 |
3 |
6 |
21 |
4 |
7 |
21 |
3 |
RNA Extraction Batch vs. Viral Load vs. Behavioural Test Score
RNA Extraction Batch |
Viral Load |
Behavioural Test Score |
Count |
1 |
low |
21 |
1 |
2 |
high |
0 |
1 |
2 |
high |
21 |
1 |
3 |
high |
0 |
1 |
3 |
low |
0 |
2 |
3 |
low |
21 |
1 |
4 |
high |
0 |
2 |
4 |
high |
21 |
2 |
4 |
low |
0 |
3 |
4 |
low |
21 |
1 |
5 |
high |
0 |
1 |
5 |
high |
21 |
3 |
5 |
low |
0 |
3 |
5 |
low |
21 |
2 |
6 |
high |
0 |
1 |
6 |
high |
21 |
1 |
6 |
low |
0 |
2 |
6 |
low |
21 |
3 |
7 |
high |
21 |
1 |
7 |
low |
21 |
2 |